Scaffold Ga0214199_1000027

Overview

Basic Information

• Taxon OID: 3300021124
• Scaffold ID: Ga0214199_1000027
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 35035
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F010521	Metagenome	302	Y
F010592	Metagenome	301	Y
F046794	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214199_100002713	F046794	AGG	MTCKACKFFVFNQNDMMGACKLNPVVVNKLPKDWCGQEIPAEYEATVIPDAPVVEVVYDINTDEVKPKRGRKNANKGQQ
Ga0214199_100002721	F010592	N/A	MSAYKPFNQYLHDVYDAPARKAVASWCNMKWGFDCRDNPNKYGVDLIAFRSDVPVGALEVEVRQAGFDRHGSIHIGQRKDKLFLNNLPTLFFALTQDLSHAYWVKADLIKGCPLIEVKNFYVPNGELFYDCPISMFKRVDLTDPF
Ga0214199_100002760	F010521	AGG	MKLTPAIVRNLYCAIYCMKPFDRWNMPLPEEIQFIVDKDPAVMGSYLYDTGEDYEHTVTISAARCGHLDTVIRVLCH
Ga0214199_10000279	F006255	N/A	MYFRGNEMGELHQLMLEHEEFLESALDDMEFGGELSQEQVDCIRQACGKPRNSQVNQVLRDVINDFGTIFGGKNASI