Scaffold Ga0214195_1005519

Overview

Basic Information

• Taxon OID: 3300021122
• Scaffold ID: Ga0214195_1005519
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1472
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F032529	Metagenome / Metatranscriptome	179	N
F061798	Metagenome / Metatranscriptome	131	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214195_10055191	F104447	AGGA	MTSTKTGYLCTTIHQLRLKNEFCDIINSIAVQKDFDSNARQYVRIHEILQEVKTINPDWRLTACAKYSWK
Ga0214195_10055192	F029090	N/A	MKQKSKVVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLVYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0214195_10055193	F032529	N/A	MAESRRLIDVTDAERARMKVILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQAPVKENTSLKETSLEDTSCEVTSSTDTTSENEAKK
Ga0214195_10055194	F061798	N/A	MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSENGNSPEGKTNP