Scaffold Ga0214173_101415

Overview

Basic Information

• Taxon OID: 3300021121
• Scaffold ID: Ga0214173_101415
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036545	Metagenome / Metatranscriptome	169	N
F061798	Metagenome / Metatranscriptome	131	N
F070906	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214173_1014152	F070906	N/A	MTENIERPLVNGSNEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWNEECLRLRYINCTCLDEGTPV
Ga0214173_1014157	F036545	N/A	MSNTTDETLKHFLKNERKERLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCEMCYQVRHPMKKDDLEEIKSLTIS
Ga0214173_1014159	F061798	N/A	MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEEMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEKGNPSK