NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214204_1004852

Scaffold Ga0214204_1004852


Overview

Basic Information
Taxon OID3300021119 Open in IMG/M
Scaffold IDGa0214204_1004852 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1543
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023520Metagenome / Metatranscriptome209N
F024962Metagenome / Metatranscriptome203N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214204_10048522F024962AGAAGMKILKSIIKEQVGNKIDLILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKIQERSAENITGLDHLLSSKIIDTLEIYLEALEETNVDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN
Ga0214204_10048523F023520N/AMTTKKEGKYVKCCDTKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLVNKILESVDNIDTSKEWNHQDNKSKFVEIKQVMTKLRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGKTLKKLGELTLEL
Ga0214204_10048524F028416GAGMERQPVNGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIFDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDH
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