NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214205_105708

Scaffold Ga0214205_105708


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_105708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1287
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N
F088321Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_1057082F021930N/AMSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLKSVENITKAIDQLVTKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLATAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0214205_1057083F088321N/AMEERIELTPLEYLHGGLAASDKLRVQISNLIKQEFAKSQNLRARMSKIHSSIKVNQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0214205_1057084F022867N/AEQLTSLASNYYNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWKNELNLLH
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