NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214205_102012

Scaffold Ga0214205_102012


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_102012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2503
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_1020122F013610N/AMETSTNTDNPEKKQKMEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDSMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214205_1020123F018161N/AMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKSHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEGEKPFPALNSKNHNGN
Ga0214205_1020124F008351N/AMNSDQETEPLETCSEELVHTVKESVEKLFSLMNAEFSRSSISNEEEDFSLLKQMCEAKANILKDNPSWSTFDPTTMLAGIAVGRIDWLDIEGPWDGVKNIENYKVIKKHLRELREYNPHWKLDEQDVIKRSTCHNCGTVKSIPEKETPLKEYTGQQKN
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