Scaffold Ga0214205_101248

Overview

Basic Information

• Taxon OID: 3300021118
• Scaffold ID: Ga0214205_101248
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3335
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F054566	Metagenome / Metatranscriptome	139	N
F055422	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N
F073069	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214205_1012481	F062460	N/A	IIAHMNLEKSIIQAVTTAVKEIRQESCIEKQVKSLIKIYDAIVVKDNETSTESSLKTTRKRKRSISHE
Ga0214205_1012482	F055422	AGG	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRTIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETEPLITEV
Ga0214205_1012485	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGIIITKEKLIESKTNK
Ga0214205_1012486	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVMNNRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG
Ga0214205_1012487	F046173	GAG	MLSLKDREIYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTALNSIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYLKEIDTFYKEKLIVRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDYKLINLTKLLNYITEKQKEQE
Ga0214205_1012488	F073069	N/A	MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFSERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARKRKWTRFY