NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214208_1004129

Scaffold Ga0214208_1004129


Overview

Basic Information
Taxon OID3300021117 Open in IMG/M
Scaffold IDGa0214208_1004129 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055422Metagenome / Metatranscriptome138N
F062460Metagenome / Metatranscriptome130N
F065414Metagenome / Metatranscriptome127N
F069678Metagenome / Metatranscriptome123N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214208_10041291F065414N/AMSEPEVVINLNNLEELNIHKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKERDNKERFKIIFKVLKRIKAMEPENHLNLASYIVSRNGV
Ga0214208_10041292F093242N/AMEYNNPEKDKIIDIIQDIMNRIDTNTNYNNNYENFLRMYAAIRKLKTKEPGLKFKVSNIPTSENNYFFRKRNEN
Ga0214208_10041293F069678N/AMSNQEQLAEGTSLTETLVDTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDRINTGTAHTDR
Ga0214208_10041294F062460N/AMNLEKSIIQAVTTAVKEIRQESCIEKQVKSLMKIYDAIVVKDNETSTESSLKTTRKRKKVNQS
Ga0214208_10041295F055422AGGMNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETE
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