Scaffold Ga0214208_1002371

Overview

Basic Information

• Taxon OID: 3300021117
• Scaffold ID: Ga0214208_1002371
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F023520	Metagenome / Metatranscriptome	209	N
F024962	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214208_10023711	F016494	N/A	LTQLVKSTLRTVDELFPPKPEFSFENMMVQFYTLKSRIKKIDPSWKFENTDTSYVFEILKLLDAVNIEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVESIIKFLYPTLNTQLS
Ga0214208_10023713	F024962	AGAAG	MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQHEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEIYLEALEETNINERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN
Ga0214208_10023714	F023520	N/A	MTTTKEGKYVKCCDTKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLVNKILESVDNIDTSKEWNHQDNKSKFVEIKQVMTKLRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGKTLKKLGELTLEL