Scaffold Ga0214208

Basic Information
Taxon OID	3300021117 Open in IMG/M
Scaffold ID	Ga0214208_1001325 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021117 Open in IMG/M

Scaffold ID

Ga0214208_1001325 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3029
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3029

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F066480	Metagenome / Metatranscriptome	126	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214208_10013253	F066480	N/A	MDIFKERENQVVSKLLFIQGGQPLYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMMTCLGTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0214208_10013254	F061527	N/A	MSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNHKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0214208_10013256	F100357	N/A	MDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTISIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0214208_10013257	F045530	N/A	MIKSITEKLEFLNSMEELYLKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWMIQRQYREWFKSHMNKTGLIRMYKSKGQIKKVYNTAITEEETHRYVDEEGPPRKRFSGIYTRQKIQLN
Ga0214208_10013258	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDIRHSLNEIGQNSQQGDGDEIFLSANTDTRHSLNEISQDSQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214208_1001325

Overview

Ecosystem & Geography

Associated Families

Sequences