NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214208_1001325

Scaffold Ga0214208_1001325


Overview

Basic Information
Taxon OID3300021117 Open in IMG/M
Scaffold IDGa0214208_1001325 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3029
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045530Metagenome / Metatranscriptome152Y
F061527Metagenome / Metatranscriptome131N
F066480Metagenome / Metatranscriptome126N
F086589Metagenome / Metatranscriptome110N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214208_10013253F066480N/AMDIFKERENQVVSKLLFIQGGQPLYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMMTCLGTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0214208_10013254F061527N/AMSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNHKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0214208_10013256F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTISIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0214208_10013257F045530N/AMIKSITEKLEFLNSMEELYLKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWMIQRQYREWFKSHMNKTGLIRMYKSKGQIKKVYNTAITEEETHRYVDEEGPPRKRFSGIYTRQKIQLN
Ga0214208_10013258F086589N/AMEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDIRHSLNEIGQNSQQGDGDEIFLSANTDTRHSLNEISQDSQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.