NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214208_1000946

Scaffold Ga0214208_1000946


Overview

Basic Information
Taxon OID3300021117 Open in IMG/M
Scaffold IDGa0214208_1000946 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3724
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016925Metagenome / Metatranscriptome243N
F023279Metagenome / Metatranscriptome210N
F025270Metagenome / Metatranscriptome202N
F035195Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214208_10009463F023279GAGMADSSKENTEAIIDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTSNPSWSTNKTRRSSPILLTPTQIGLQEESTS
Ga0214208_10009464F035195N/AMEYRTLKTEAEVVELVQNSLNSVETEKSFEDNYEVMLKLFYAIKRLKSIRPKGTFRAVGVSFKQASTPQK
Ga0214208_10009466F016925N/AMKRGVGKAMPTQHIVATNGIIRPVGPTDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIKQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214208_10009469F025270N/AMNQETLENGDTLRSLRVRQATKVSKYKLKRQWQKIAAEALAMLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS
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