Scaffold Ga0214186_101577

Overview

Basic Information

• Taxon OID: 3300021112
• Scaffold ID: Ga0214186_101577
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1933
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F038078	Metagenome / Metatranscriptome	166	N
F043767	Metagenome / Metatranscriptome	155	N
F045533	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214186_1015771	F026798	GGA	MDKNKEKLIFHNCTEESSKSKREDNVNINKAIDENNQLIAIEKLAIRRGIERVNRRRDSQQAKIIRLVNSLDVKQNFQDMNNQLKLQILFNTVLKLKRVY
Ga0214186_1015772	F043767	N/A	MENQEQGQSNGHSLFFSRHPSEASAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPIDDSNYEIELDS
Ga0214186_1015773	F038078	AGG	MKLRFKNNRMAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLKYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYNTTCPCSQCSTEEGKEDTISSSISKLNI
Ga0214186_1015774	F045533	N/A	MAEKPEDNILGSDQRPASEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINNDKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKGEK