NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214186_101510

Scaffold Ga0214186_101510


Overview

Basic Information
Taxon OID3300021112 Open in IMG/M
Scaffold IDGa0214186_101510 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1973
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032143Metagenome / Metatranscriptome180N
F043898Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0214186_1015103F043898N/AMVTAPAVLVAAAAGAPSTVPRYFQSQVEMTGKKRMHPENVAAIKNRFLELFIFRRPPQDERDLELCDCFNRKHFIVGTFERALALLEKHQPSDFHGPALYAYVISALGKNAPLVEQVTSGDQEHYMRIHRLAAKYNV
Ga0214186_1015104F032143GAGMAPIIKTHDLKYGYIQMEILDETTGLRFYWHNNKLADKPILLFPSGMVALVKALRRAYEIYDDQVLRLAEAAIACGELVGSEGMALGAANAAAPDIQDEVIYSAVIATSKVVQIKLEVSVYHGKLYIFLKKSSWSEEDGLWRPCRGAVLLDRHQDDPKVLLQFALSAHKE
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