Scaffold Ga0214186_100745

Overview

Basic Information

• Taxon OID: 3300021112
• Scaffold ID: Ga0214186_100745
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2807
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F017597	Metagenome / Metatranscriptome	239	N
F019778	Metagenome / Metatranscriptome	227	N
F022147	Metagenome / Metatranscriptome	215	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214186_1007451	F019778	N/A	MSSNVASQAELIFLYIGESRLIKRISNNILLVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRASKETVQSTAQTSNNIEKMEIG
Ga0214186_1007452	F017597	AGGA	MKKIFRSEKLLIKLAIKKKELIKTTKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNRTNNLQIWGQKS
Ga0214186_1007457	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEVYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRIQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQE
Ga0214186_1007458	F016243	N/A	TKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKIQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCDNE