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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021108 Open in IMG/M |
| Scaffold ID | Ga0214162_1003406 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3219 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017607 | Metagenome / Metatranscriptome | 239 | Y |
| F021250 | Metagenome | 219 | N |
| F033698 | Metagenome / Metatranscriptome | 176 | Y |
| F054611 | Metagenome / Metatranscriptome | 139 | N |
| F067416 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214162_10034061 | F033698 | N/A | MKFLRYKQAARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDIKHDTNIVLRLKNISDSKCFNSSNDNESSPIIFSHSVQSRPEPIVRTLTTTLAGAVSTYNNQALNINYYNSGISFFNPSPDKLYNFTIPNTFTNNTIFEFEITYEMNAGDNIVLADDSDMFYKFQCSLIICDEEEQDLIS |
| Ga0214162_10034062 | F054611 | N/A | MSDIDEERLQILMELVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI |
| Ga0214162_10034063 | F021250 | N/A | MIIEENLLGWNNIPVKSKEVVYPQSKDEKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDLSDDELKILYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEDQFKELYEYATKEPFNALVIDATRGKPVFKKNFDKVLNIS |
| Ga0214162_10034065 | F017607 | N/A | MNINTFYFKKDIVKSREAFNELEKVRLNSKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHNPYKFTPHIDYKPKYTPPYYAPQETGFGSFSYESYVNNLKRI |
| Ga0214162_10034066 | F067416 | N/A | GLRRVYNQSKYFAHNGDSIVTTKWRIGNNSYEPQNIDEQFNSLLQHFNINQDTMSGIYPGINSIGAFRDHSYASICSLNFPEKGNVYTVSGLDTEQTPASIEWIVTSSTFTPAGGLAGNYAITSGVNCLPYLICAYSSHLEIGAGRVINLIP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |