NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214162_1001198

Scaffold Ga0214162_1001198


Overview

Basic Information
Taxon OID3300021108 Open in IMG/M
Scaffold IDGa0214162_1001198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5777
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F005697Metagenome / Metatranscriptome392Y
F021065Metagenome / Metatranscriptome220Y
F029675Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0214162_10011981F029675N/AQARAAGLRTETRAGDVRNDVTIKYGATSSAEKSASDAISILTYGTLAQIITTTLHNATDAEDQADFYLALRKDPQAIFSEITFDLTNPELDDADRDDLIGTFMGQAVAINDLPSNMGGIFQGFVEGWSFQASYNQVSVSLLVSPVAYSLQALQWDEISAAFTWSGVSPTLDWENATIVV
Ga0214162_100119810F021065N/ALKMTLTRQEEFTCHDAAIHLAKANTDYWQTRSGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVEFDPFEQKGKTKADVGSHFEVRWTKYVSGQLIIHEYDRTDDVAILVTGESPHFFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHNSV
Ga0214162_10011988F005697GGCGGVGFLDNYEASRERLERWLKTYPTGRIETSIVEFSADKGYVLVEAKAFRHEDDTRPAAIDFAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANTDKEYDYWTTKFGEVPSYKTEEDMEAAGVPTLASGVAEIATQLGGQLVAEAPQCRHGHRIFRSGNSAKTKKDWANYSCVGRKPDQCDPIWLVLTSDGTWKPQV
Ga0214162_10011989F000403GGTGGMSDYMEIINPQTMIGKLLKNGEVVAEYKMEQCDKCSSLVRFDAFGYQKGYGNEKIIWFCVGCR
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