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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021093 Open in IMG/M |
| Scaffold ID | Ga0194123_10023224 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4752 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -5.5789 | Long. (o) | 29.514 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013523 | Metagenome | 270 | Y |
| F026558 | Metagenome | 197 | Y |
| F032663 | Metagenome / Metatranscriptome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194123_100232241 | F032663 | AGGA | MSVPYQRISNATVQDIIFYDPAAERRAAQMQVDWDKYFKVGSQEILYQLEFGWWPKYCDTVLGAAYYTNLPNGALISSFNPSLLIKNDQTLIR |
| Ga0194123_100232244 | F026558 | AGGAG | MNSQELIKKNPIYGATYEQMLSYQYAYLGGQVFKRYVRKKRPSEDSQLYIDLVNNTVAQPICRYIVETINDVLFEPGVKRDLKFCTSTGQNIDPDNIEWAQLFCLDADLQNRSIDAFMENVGELSSIYGYCWVFVDMAMQGDANYGRPYVVAINPLQVWDWEWEWFGGKPMVKYCKVLETETKDDYYIKCYHLGTSSTPSYFVSYRLGKNISKEDVEEIGRGDYPAGMSVPAFIAYGRRDPRTLDFGISDIDSACDAQREHYKLECEAYTSIQFAKTIIRADKGVSIPVHAGAIVRATQGQVESIPVDTGDVDKITARQREILEQIEALTGLGGLRNTKNQLASGIAIIEERKQLHRLAKSKARLMEVTEELIFTYAARFMDMRWAGEIHYNTDYEAHDTNYRLALFQQAKTLVQNNGIVDSLITKEIIAMLAPSTSIPQYEQAYIDTITDEQVKTLMTDENNTVLSRDLGDQIPTPEDFNEDEDVYGDTLEYDSGEGAAIDNGIGTPVAYTGQSYSTQQAVATQIVALNAGR |
| Ga0194123_100232246 | F013523 | N/A | NRKSNPLISDTDNTVNAFINRNGLRVKNDDKLLLEALTTYHFEDGSRKRLVKYTEQKYAHIDGLGDALRYGIHHLFPITHDDMGIPEYVGMDRRYQQYTTPGIQHMPESPLYPGGPTWDEIIKGSENNNDYMSY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |