Scaffold Ga0194123_10004943

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194123_10004943

Scaffold Ga0194123_10004943

Overview

Basic Information
Taxon OID	3300021093 Open in IMG/M
Scaffold ID	Ga0194123_10004943 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14704
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (25.93%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-5.5789	Long. (^o)	29.514	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194123_1000494311	F004278	N/A	MLSQLAKQIFDEMIAWWKKVWFEARLKARLDMIEFENRIEAELERERQAKPIYIEHPIDPVVQTGESKLLGGAMELKAPWYDNGLEPGRPSGEAEASDMDDRP

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