Scaffold Ga0194122_10216044

Overview

Basic Information

• Taxon OID: 3300021092
• Scaffold ID: Ga0194122_10216044
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1005
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007421	Metagenome / Metatranscriptome	351	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194122_102160441	F007421	GAG	VLHVXKYHYLSFQILICLTLCVWQNDADLIGHSKREGRQSDKVQGGIDFTGCTTDPSTGFCCIDKDEEFTTLQKDPVLECTHKNVEKCHYTYITQFDTAQEEICEENFEKSCQLTFKQQAFNETIKKCYRPIEKVCDGSGPKQCKTLYESACTTKYVEKQPGKFVGDTNCEKRPVEICGSGCTTSEGEEEC