Scaffold Ga0194122_10017331

Overview

Basic Information

• Taxon OID: 3300021092
• Scaffold ID: Ga0194122_10017331
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5296
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194122_100173318	F021068	GAG	MSCGPRGMFMQPSDCTIYAVCINDEKVRYEAKSNIVPILGGAWAIADEKRDALRKEGYMFDDEGGYMSALNERWGELSCVQWMMLNAEEKNIGNAQYRRNWIEPNNEWYADDTLYVPEPAVFACSLEKQFYGGHRDFDAPLITRELADGGQWLFNREEIDALWAQNLFIGCNMARGPKREYKEFMTVLFHALIPIWEQHKNHFLSIEGYDRRAIAFIAERIITGIVLYRDKILPGVKIATAPIGYIS