Scaffold Ga0194133_10159704

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10159704
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1586
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_101597041	F010817	AGGA	LKNFVSILALNFLLVGCATITPDKIQDSTASYDSSTPSNYNKDNGGLIAILDNGAVITASAKNRYNKLIEMYKVKFKKEKAIELVENAGITPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKAPADNII
Ga0194133_101597042	F091423	AGAAG	VTELLGAVVRLVGGIFEAINNVFGAKNTKEMKERHQAQKEVDHQSDIEKAVKEKDLEKLRKHIGS
Ga0194133_101597043	F016772	N/A	MNKLNLIAVALMGIFMIGCSTTNTGGDNQIGGTTGVENALPYIKPAVILACTVVLEQALSPEDRVKKAKMINNVATVVQALTVGQTPTPDQLQKALSDHLPAEKTHWAKYIIAVKDIYAAQFAKLNGDAALAVKVLNAIASGCKDATEEYVE
Ga0194133_101597044	F009669	N/A	MKSMLSKLFGPNWRTSTSGIVTVVAVTTAFVIHGDNSLVAFLPDKVEEFIVGLSKLIAVVSGVIFALTVKDSHVTGGDVPQTVEAKKRVQKIEKNLAEKAGKKEL