Scaffold Ga0194133_10058537

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10058537
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3238
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F056552	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_100585373	F002333	N/A	MSTQTTQNLNQAQACIYTRTNLRRAFQDFDDTDISGIYLRDDLCLVARRDGSQQTYNRQMIVSAFQQYTHRLKDFFAYLGPNYRGPSIWHNSAYIMFKGWHYSHALGHITPNAQLQTHWADKFIHLSDPAKLTALLQSDQTDLGHLVAPDGLRLANRPVDLESELEDETSGLQTINAEPYCSCGSFQRQLLNVSEFQQEIQGFKPWCIHLTWFHKYRELLCKRTEARNASPGGTPDKCVAWWYAPPSDATSDGRFVLLHTKSGAQAPLTHWRTYKPKETFNQRDAWDLFFNMLEAGYVPFPGIALPQLQAAVKKS
Ga0194133_100585377	F056552	N/A	GSLLMTTPTHDQFTLLYEDEDKKVLHEFKGVVADDVIQGLIDFLKGCGYMEGSIFETMKELSDMYFDSLKTEQYVLQWDKPKAE