Scaffold Ga0194133_10017421

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10017421
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7351
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F044916	Metagenome / Metatranscriptome	153	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_100174211	F034827	N/A	DFDSVKEGEVFSFFDPESVQRGNHSVFMKIKNGTNNIVNLDDGKVFNFLDKKRNTLNDPDEKLGNLIYKLNAKINIIV
Ga0194133_1001742112	F044916	N/A	MGRKKIEKSRIEKGIEKEEKTFSAMAKKIVDAISDEKFLREFTKQCLERLYKDDPKLFAYHSKLKLKKK
Ga0194133_1001742119	F096610	N/A	MATRPKTYFVKMTDNTDGTITISESKVLDKVNQHARHWRSFDKRKLTSKLRTSVLVTK
Ga0194133_100174219	F032548	N/A	MKKKQNKDMNKAIKLLEELVYQADEDCPHDCRTIHFTNALEEASEFIKEYKNRQ