Scaffold Ga0194133_10008167

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10008167
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12304
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003267	Metagenome / Metatranscriptome	496	N
F012656	Metagenome / Metatranscriptome	278	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y
F044982	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000816712	F044982	AGGA	MEFDVFVGGSGKKLTDVQRAALADFGVTLEEGAIDNKSYALVKKWLQGVIVMAKQNLAKSKAIASNSLAASIKFEPIALTDTSFVVAIVANDYWKFVDLGVKGAKSSGRAPNSPFSYRDKKPIWKHRPPVRKIQEWIAFKSIPVQGRDKIAGNRALAINISNKIWREGLRATNFMSNAVTEDMVAVLTENIAEVLGKTISVATSR
Ga0194133_1000816713	F024098	N/A	MAITVLSGSPQAATPVYNKMLFKVSGSLIAEPNFRYICDVKNAAGTTTLARLKCDKLPTTNFGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLDFTQEFGSTPVVSGNFTTVSGNIAFAGNLEQLELADWSGGVYFPSGGGFNDGISQSLATNVGRTVYADSYGWLAQGIGSGFTNPQDINALVNYYTAGGANTRTYEVSIGSVSGSTIFRFGAGPMNIKALTSGQCSDSQVGSYLFPTAENSYYTIQFLDGEQATVLFTYTIGPCERFNSQPVHFVNKFGGIDSYTFTLKNRKRANVQRDTYGYNTDVFATLTHDKVWAGSFDYVYALNSDYLTDAESSWLIELLRSSQVWLELDGTLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0194133_1000816714	F020667	N/A	MSVTLIAYPLNDSNTEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEQCFGFAYNIQSFVGGFTPNKKIRAAMWDEGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTVGVTGMNHIPTSGHVSGTWTASGAYSSGYVYGVIDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMINLIFTQAGYRYSSNFFNSETFGKLVLPYAAGTMPVNLSGSNIFAQSTGNTANFSELVEQKISFSKDTPAPYYDNPNYWVASSSTFVAPSVDTRWNVRVSFTLSGSVASTNNNLCRMAIRNPVGGGNFATVANLFLKKNVVSVVDFTNVTIPAFFNADIQFLVEWDGIGGFTQNFTIVSGATVQWTCLENPTSIGVLDMRTAIPADVKQSDLLQDLQKMFNLHIMADAQDPKLLYIEPWVDFYASGVVDWSQKADENVEQILTNGDPNASTNLIYKYKDMGDYLSKTYKQSFPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFSTDKIVGRTWDIDGTLASGTVKSLQTGYRLAQYNLVEGQTEWAYQYGVSSTVSGNVALSEGILKMPFVSHIDNPYAPTFDLAFEIPRLVYYNAVNASGNTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSPVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLAEFVPVTNVPIFNDPSFMYNGPINNDPADPNYVEGTNPSSPS
Ga0194133_100081674	F012656	N/A	MDSLMMVISTLCDCIDAVDESNAPNGYAVKMKIVDKIDQLIDKIEY
Ga0194133_100081677	F003267	N/A	MKLVHYYHIYCGGGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILEGSLIAPKVKVVVTRTNAYEQATLTEMYRASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERAIAELENVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPIREHRWQAEHWIGKAEGMTVYNACKGWPAPDKFVVTF