Scaffold Ga0194133

Basic Information
Taxon OID	3300021091 Open in IMG/M
Scaffold ID	Ga0194133_10003832 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021091 Open in IMG/M

Scaffold ID

Ga0194133_10003832 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20916
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (55.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20916

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (55.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.8915	Long. (^o)	29.586	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-4.8915

Long. (^o)

29.586

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F004475	Metagenome / Metatranscriptome	436	Y
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F011077	Metagenome / Metatranscriptome	295	Y
F028423	Metagenome / Metatranscriptome	191	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000383211	F054581	N/A	MSMCPHCNYPLIPILYGYSDPKYVDMHKQGLVFLISTTYHTKNDPSSYCKKCKESFNIKLNYKIN
Ga0194133_1000383217	F004475	GGA	MNNWTNELNDKQKEDVWNFIVFTVKEIREQIAKDIEATIPLWKEKGMLKSRRTQKAFEASAAIARGQNEQING
Ga0194133_1000383226	F010599	GAG	MEMLFIIFLSTLSFSFAIAYWATFQQLKESNLLLNDLFIKNKALQELSFQVKDSIGISDDAVHKENFIKFLSDSRDWAFEYIEQSQKTIREVSDELKNKGLANYSEKLLALLPEIKKEK
Ga0194133_1000383231	F003688	GGA	MYTDLMRHAVHSIPAPKGFGVQIIDNDHFLTIKLDEKKFLHMVHDEKISALQYVVKIKKALEDCGAIVLVTREAVK
Ga0194133_1000383235	F006885	N/A	MEYLLIIGLTSLTVWSIIKISNKNRITFLKNIRYRQSDMCEIIKDVLPKQRFDGPKAITQSQRHIQKNMLRVVITEGKAYWILNNVFYTANAINGRVDEQTIKILNFENMSKKELNKMLLILDDLKQGTAQNDSGGTRD
Ga0194133_1000383236	F028423	AGG	MENLEKQELIQLIAFYKQKLSDTELELLKIQLEVNKLNSIILQSAQGLSKKSK
Ga0194133_100038326	F011077	N/A	MITDNLTWAEEENNLWKGWTYSLKKNRYYFNDVGNESLAVFWADEFLNQAYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194133_10003832

Overview

Ecosystem & Geography

Associated Families

Sequences