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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021091 Open in IMG/M |
| Scaffold ID | Ga0194133_10003725 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21321 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (19.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -4.8915 | Long. (o) | 29.586 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028489 | Metagenome / Metatranscriptome | 191 | Y |
| F056551 | Metagenome / Metatranscriptome | 137 | Y |
| F078626 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194133_1000372537 | F028489 | N/A | MIMKMIGKELKVKHATDYSKFAILPMNRGVDSRHVQKMIASVRKMGVLRCVVTTTTDIIEGITKTYIIDGQHLATALEREGMPIPYVDVDVESEKDLIEKMAYLNNSSKSWELMNYINAWKMIEPDYMKLFKWKNMYDIEISMLACIATNMPSIRYGTQPIKKGTFRVTNPNAEDMCKAFNDIFLTIGMADRAVKFQFLNAFMVAYNGKYDHQQVMTNINKHIKTIKLMSSGDETGAYIRKQIFKLSK |
| Ga0194133_1000372543 | F078626 | GAG | MEKNSRKQKFEYKGSLAEYQTVAKNLYVKYEQDKFTAYQNYLYKRALYGLNGLTQDELAKTCEKKKHRINKVYIKGQNVINVYKQKLTIGYTNILFETLFPNSPITDYLLNDTDTDVNFKNTLNFKDLNIKKDDIIRIFIEEGVLPKNFMSLTNNPNELPRLKNQKL |
| Ga0194133_100037258 | F056551 | N/A | MALSTTDLKEGGSGLPKTIAPGNYTLKINSVALDDFKFIQGAYHLLVNVETEPIAGFEGFLIDKDNESLGHYAGQIGRVKASQYAFADGKTKTGIEIQRDRSILMFLQKLCKTLGINEWFVAQDNAHDTIEEFVEAFNKDMPFKDIYFDACVAGKEYEGKSGYTNYDMWFPKDGKGTYAITAKGGAVLPYNEDEHLKKMETKTVSSFGDDDDLDIPKRAASDFSLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |