Scaffold Ga0194133_10001627

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10001627
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38057
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (55.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F034542	Metagenome	174	Y
F099215	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000162729	F099215	GAG	VVYTPLSNYKYDSGFHRIQTGPNHEGYIVVSSGIQDIGADNGIITAGPPNSGTWYVTNAWRTVPQAVSGYWVDYQDNDYLPSGSLSAYTGYRPYSTTKIANAKVATAIGPEYGTRNEGKYTYYAGTAPSDQAYNPYNTPEGNTAAEGKTGGGVTHKNYEGTLLTNSLGSQGTSNRAEWTYNPPVYCKTYTETVRSDTPGLMSSALRYIYRGRSTRYAYNYGSIYLQNSESVRNIVRTFSATVNSSNQRNI
Ga0194133_1000162731	F018919	AGGAGG	MAINPAQISVAKIYPGNYTNVLRFWHSTSNFSFLNENGTSETYTNQPIGGPVGVVFRPGWIAQQAVGYVDLSYKASTSTNQLDYYTQPYASGQNSTNEPFKAADIIIPSPDYHKDIRADITDGITVPSGAYIYRVSVRLDGGDVITSGIAGAQTAPGLGVGPALSSGLTTAPSPSGFFANIVGSNSRIENGSFSSSNAWNSATMHVVTTDIKYRLCSTATVPGSGLGLGSGVYDPRAKANKLSGKNKALGICEVCWLVPDEAPKRDDLALQPGGVVESSVYTSTVPG
Ga0194133_1000162736	F001215	AGGGGG	LSSTSTNKSPCLVDRPFLRGARITSSTPTCDPTNPNLTDLIQLVRVGDLPSEDAAFVEDITVVSNEDYPDRKGIRTADIGLYVYAPNQGAPSTSAALMVGRFEVGLSGSTFGYPLPVQLFAVSAPVPQVGDTTLEAPIQIGKGEGLYLEKGYILCAGYIGTGPTAVSGGLSPSGITIWAQGGFY
Ga0194133_1000162737	F034542	N/A	MARKKGSDNFNFQSFKANKSVEPTKKIKGSDNVGELLRPLPFKRRFRPALNTKDFSLVSEYDYVSLWTRWRRGYELSMYSQQAYEGLAYTFKYYIQNPGVGLYLPGMCFMYPTTRADMRMWMVGIRPRDSFNFLDFGYAISSVTQYDSTTYAVRLNSRFGAPVSFFTGEVLSNRFNADGSVKLFGYNNYTVTAVGFNNVPLDPGYAPIFDTLFLSVAQQYSWSVVDANTMSVPATGPPAVGEYLTTEMRAQCTCPDFLGRENFNLYDMSLRMRYPYTRPQNLDPGFYDTGKTGDREVNTIDYPGSARAFGFIYLNEIYNIPSVSERSYSDPNLYYYQPKWCKHIYAAMWDLQRRYGEENATSPWLPQPNDEPLNEYYREKLNIDLNKQFTFLKREKDLVWWQRYSPTRDDMPDRMMNSDMYNMMTKTLNIGDLESFEALTAPKFEMFNVDEFDPFAPIALTNLNTYDGGLYANGVLVSGAVNIINGTTYLNGTQVPPLANALNGGTY