Scaffold Ga0194133_10001425

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10001425
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41605
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (63.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011267	Metagenome / Metatranscriptome	293	Y
F034078	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000142521	F034078	GAG	MYLNKNGDFELANFLYKTINSLMKQSLDMGTLLSSDQQKLRAYKEQTKKLFKDKWFDVAEALEFFGIIEKCTCSSYEKDAYCEICKGARYVTSSFLSPDSMREIGVFTNAGLSAELADKLQRSLQQAISDLS
Ga0194133_1000142550	F011267	N/A	MPTGDATVVPANGSAGSVTWGDTMSGWDPLGSGATPSSTTGSTDTISVAARSVPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVNDLNADVAVGDLIRADHMGRPVVLDTALCGTHPYLQVGKVIEVEKFTTNFDDGLLSYMQLPSDPGALKTVYEITKTGPNKGKLGIRANLDVYKVSGAFRVNLTL