NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210377_10166936

Scaffold Ga0210377_10166936


Overview

Basic Information
Taxon OID3300021090 Open in IMG/M
Scaffold IDGa0210377_10166936 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1425
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9208Long. (o)-106.9484Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049075Metagenome / Metatranscriptome147Y
F076228Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210377_101669361F076228AGGCGGLRASSPLVLAVAVVVLASCATKAPQDDPARMALLKDAYDRLHERLEKAAATEPLVASAFADPGQVVLAIRSGLIEELAGNVARRYLDRVTVDLSEVEGHSSGKLRKKTLFGRVKVGEWSVSVDLGNLAGHLRVGSPRVSLRGPDLIDVELPVDVQEAEGDATLRFGWDSAGIANLVCKDFELTREIRGRVLAQRHLVSGAL
Ga0210377_101669362F049075N/AEARACSDTPRPLGGAVVALPTPVRKLRIASAVLVGLAILVLAFAQLRLMRPGRPPRVSAREALLSRQNEELLKLATAAENGTLLDFKGVLIVVDQALVQDLLRAVTPLEADVGGGFHVKIDSAYTAFGDGVALVSMTGTARVGGASVGSRVTVLAAIDIVEIHPVSGVLECRVSILGVDAQDTRALGHGDPVGRLTEALTRGGLELLLGPLEIPVSVEDRLSIPAVESERLQIAAENLPLTIAVRQVKAFGGRLWVFVDAALAPSAAKTEAAS
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