Scaffold Ga0210377_10045356

Overview

Basic Information

• Taxon OID: 3300021090
• Scaffold ID: Ga0210377_10045356
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9208
  • Long. (^o): -106.9484

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044805	Metagenome	154	Y
F082441	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210377_100453563	F044805	AGGAGG	MKYKLIPYVLFMVAVAVTTKAHSDLASEGHGHKTPHGGIVQEAEGMHAEFLLDKTGQPKLYLYDKSMKPLDRADLEAKLTVKGHGGAQETRVLKFSKDAKGGPLFTGEAIKGLSDWDTAVVSLKMKDGWKHIRFSHH
Ga0210377_100453565	F082441	AGGAGG	MKELIAISLILISLGVVSDSSAAEVTLGPDLKIPPYYEAGSGRCSPGRGYNMSAEAPGYPSTYPKMNLRVFSGEVIGFLFELDSKEGWKPWYDQPEGKPTKHDDDPAHYTQTIYIKKGPTAEECKSSKGPYGKEK