NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210377_10015766

Scaffold Ga0210377_10015766


Overview

Basic Information
Taxon OID3300021090 Open in IMG/M
Scaffold IDGa0210377_10015766 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5658
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9208Long. (o)-106.9484Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084200Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210377_100157663F084200GAGGVAVVYVSRLPAGCPDLGNICYPMCAHHNAPAGLQAIVPLWGAPTLRLTETAAGRYEGVLTAVPTNTQLQLYGRDIGMCCVDSCNYPPVLEDILLNGTKLTKVVREGLPPEAQAALEFSVDGRGAIRQ

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