Scaffold Ga0210377_10002132

Overview

Basic Information

• Taxon OID: 3300021090
• Scaffold ID: Ga0210377_10002132
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17537
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9208
  • Long. (^o): -106.9484

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210377_100021323	F013826	GGA	MAVCWRCPVCNEISCEVDVNAAGNPLACDHCERAVLPHETLCTVCETPNPWSRRDSVHYACRECGNSQTFYSHAAQAG
Ga0210377_100021325	F002324	GGAGG	MGEIKLFQICYEGDLNVEISHAMRRLGAEPNFDQSWFVWLPEGRHSAPLVRYLRAHVGADSRLLVASAQFTTSRDFLLVRHSLTPGADYTELHTAIERLGVVVEIPFESTFVIQSDDRTEVHTLGRALGELCPDDALMVTGISHDWAYCDSGVSRMFVAEQNVAEARFRDF