Scaffold Ga0206679_10146298

Overview

Basic Information

• Taxon OID: 3300021089
• Scaffold ID: Ga0206679_10146298
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1346
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F020372	Metagenome / Metatranscriptome	224	Y
F042386	Metagenome / Metatranscriptome	158	N
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206679_101462981	F007055	N/A	TLTKDTSKEWVAIVMTWNPVNYTIDKEFSSEVNCWNYYDNGAGESKMLNSYGTQILDHQGNKPDAEYMKKHRPAHRVYPTRMYKNNGDWMVWLTCDLRSRHPEL
Ga0206679_101462982	F042386	N/A	MNNAGLTTTYEEGEKGQFELFKDNASWMREDVRDGIPKFFTLEHVEKRLGGLGEY
Ga0206679_101462983	F020372	AGGAG	MPEDTQKNKIQILINGKEMPYSHQNMVAAINSFLPYLTNDDLDEFTKVFHTTKDHRRQKEYLSKLETLKHSWPYPDTIQQPEND
Ga0206679_101462984	F058211	N/A	MPIPIENNSWDYVQGLIEKEINSAFKLRITKEDDNKMKFEEDHPYMKRLDEALKQYSVVKVIDDNGAVHGHDFEEMKQVILDTLFTNYLGETVRK