Scaffold Ga0210404_10155093

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10155093
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1203
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062584	Metagenome / Metatranscriptome	130	N
F074603	Metagenome	119	N
F104806	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_101550931	F062584	GGAG	MTEIDDPEVLRREIRTMLEKVTDRGSLIFYQWLVRRVLANYPIPGDEELRALHQAFIRMHATFKAKKRPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNL
Ga0210404_101550932	F104806	GGAG	MPKISLKERKKLDLFHEQRKAKLRKKYPEIHGKKLDYVTHSFEDNDGGGWLYINLYFTDGTNFSMDFSMNNPAIVPRCIEYGDMSTGDYKNIRTYYYRGEK
Ga0210404_101550933	F074603	GAGG	MLQFPAPLPPGEIPPLTCFEQFILCVALVAISTALLSFFLPRPLFCKLFKIAFPFMPERIGDDDAKD