NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10067528

Scaffold Ga0210404_10067528


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10067528 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F020766Metagenome / Metatranscriptome222Y
F041671Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100675282F011479AGGMSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLDKVFGFTSKVLQKKIAESLLNKVGAAQPSNTLDFRQILRLAKAKFPHATIPGQLGP
Ga0210404_100675283F017116GGAMASDPTIAMFETFNLVLILVAFVIFARLAFKGKSLGSFRFQLSIFLLIWVISEIPHIAESIGFLAATGYEDTGLYLHAASMAVFAMFVGWRSLRFVSAHPPAPITTVLLPTDTPKVLKS
Ga0210404_100675284F020766N/AMASVTRLLWEQSVPKLNQALQLDLATGGIVLFTIMVAAGIVPLIMALKAKVRSLRILSLLLGLFAVVHGFYHLAFGFQQDLLADAVFEPISLLLLIGLGAYYSKVGIA
Ga0210404_100675285F041671GAGMTGSGTEKRIALIHRVILPHKESPKEYAVLVTDIRSIFIRMEKTRSSYWLRGEMKFGTALLTDVMPKTLEDYEQIGLEALAADNANFTVPHENVTSLILRKEEPEFRAREFFVWLTM

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