Scaffold Ga0210404_10001345

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10001345
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10661
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007916	Metagenome / Metatranscriptome	342	Y
F022818	Metagenome / Metatranscriptome	212	Y
F026494	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000134513	F007916	AGGAG	LRDSRARQRLEVQALLILERIAGSKEFLVSVLLQAHGQFIGKTSLGTVAEGQEILLSLRWDKPRQHFVASSQAVGSVPILSFIPFALPVACRLAFSPGSRWVKSSELNSDVSINTETYENQN
Ga0210404_100013452	F026494	GGAG	LHPPFRIFKLQSDGDLHFVEATQTFDDAKGRVTELGEVWPGEYVIDNEETGERAFVSTRNEWKN
Ga0210404_100013456	F022818	GGA	MLKPLDIFIKMEDGTYVWKAAADSFELAKSTVQRLATTSPGEYMIFNQSTGNKIVVKDGLPEPGPRRKSFHEGC