Scaffold Ga0210404

Basic Information
Taxon OID	3300021088 Open in IMG/M
Scaffold ID	Ga0210404_10000821 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14459
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14459

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F015713	Metagenome	252	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_100008211	F002266	N/A	EFIHDMGLVSVLGGNELPSLISAILGKPWKPSAKGFTGWLDWWSIEISGQSVAQVSREIEGRNDILASRIFKRTKTFVSNRLWPILEPIVEHRQDPEAKRRTLSDLDLKILETIQGEGSIRTDRLRKKLKLEAKENNSKFHSSLNNLESYGLIVGVEDPNPEKHLHSNIWQTWGNRTHTGKSHTNLPYNEALSKLFVKTVDACVLAREDQIPRWFRWSSDMEAAKEQLLLDGAILKSGQYIVSAKV
Ga0210404_1000082111	F007071	N/A	MSGLSLRLTEIRSFLLPVSQFVAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGATTLLALFLNDLDGVAIGAIVAVVATSRLVQKLN
Ga0210404_1000082116	F007642	N/A	MPSLTAREAVTVQEKPLAEVLVEGELSPFEHEALYRVLRKCFRLEHPSYGPLVDEDLTTRVNVTFHYPYVTTIFTDVLKENWRDLKELLRQVRYRRGKAGAAVTFTFIGDGRRLVFRSGDLEEKELSSALDQIGHLTGILAQMLRPGTMEKSLELVEAHYDKKSDRWHEFKGFGSSDRTDSYVFDESVFRWVRS
Ga0210404_100008217	F015713	GAG	MKFSWRDVAEDVEKHAHKLAEDIFALEPDVSEEVDLKALFERILGKEDWTDKLAAHLGRIKGLFHRPQKETELPEDLKQLIPNMRDVESAYVDITSGYKDFIKAVWVAQHERQWRE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210404_10000821

Overview

Ecosystem & Geography

Associated Families

Sequences