NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000620

Scaffold Ga0210404_10000620


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000620 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17187
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F001373Metagenome / Metatranscriptome712Y
F010388Metagenome / Metatranscriptome304N
F093618Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100006201F001093N/AVETSSRTATPSNPLMLSRVFRFNDPQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFTFLGYTLAHELGGTTPKPIRTVADLQVPDEEFQSFVNTARTATLTDEQLADSVLDVGINWEHFVASNDNELIPDHPLKITDVLMQEKIDSLDVITEAFVREINLRSIEKQTGTGTKTRKSH
Ga0210404_1000062015F001373AGGMAEKNEELLLELRGKNTTRTIKDFSPAGIRLEDNLEGESKGVYNATFYGTITLLAKPDRTIDYEVRQIDTTSDGDTVLVYYKGKSFIESPTHNRFEGETTFQTASKKLAWLNGIKGRVEGGYDPVEGENTFRIYGKR
Ga0210404_1000062022F010388AGGAGMKAGGHVPFEEFPLKEVDLLVHELDKTKPAGSTVIVTPMEDSHHSPCLKEMIAVMVHTAGNDDHSGEIHSIYQFCPECKIAVRVL
Ga0210404_100006206F093618GAGMDKKTIGAVVIVLVGVASFGTLLAFYTQPISCGCNGSSSPSSPWYPCVQNPCPHVTLNLDSDQFNSSTNVTLNISWGGVDPVALIAYYVKDSNGAQYANSNWRGPTIPPAAAIPVNILIDGTAFTFQKGFTYTVTIVTSTNNQYTFTITY
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