Scaffold Ga0210404_10000467

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000467
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20943
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (50.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F014965	Metagenome / Metatranscriptome	258	Y
F046289	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000046710	F046289	N/A	VQDSVEVWDAPSTILVGVRVQVRPVAGLIEDVRATVPVKPLIGATVIVEVAAAPAKAVTAVGLAATEKSVTV
Ga0210404_1000046712	F014965	N/A	VLDPEPVTLVGVRVQVKPVAGDTAEVRLTTPVKPFSAVTVIVEVPEAPARIVTVVGLAAMVKSCTV
Ga0210404_1000046713	F014965	N/A	VQESVLVPEPVTLVGVRVQVRPVAGEMVEDNETTPLNPCRAVTVMVEVAAVPAFAAMDVGLAAIVKSCTV
Ga0210404_1000046715	F014965	GAG	VLVPEPVTLVGVRVQVKPVAGETVAVRETIPLNPFCAVTVTVEVPAAPARIVTAVGLAAIVKSCTV
Ga0210404_1000046716	F014965	GGAG	MLVGVRVQVRPVAGDTVAVKLTTPLKPCNAVTVIVEVPEAPARIVTLDGLAAIVKSCTV
Ga0210404_1000046717	F014965	GAG	VHDNVLVPEPVTLVGVRVQVKPVAGETVAVRETIPLNPFRAVTVIVEVPAVPAFTLTVVGLAAIVKSWTV
Ga0210404_1000046719	F014965	GAGG	VTLVGVRVQVKPVAGETVAVRETIPLNPLRAVTVTVEVPEAPARIVTVVGLAAIVKSWTVKVTVAE
Ga0210404_1000046720	F014965	N/A	VQDKVDVPDPVTLVGVRVHVRPVAGDTVAARLTVPLKPLRAVTVTVEVPEAPARIVTVVGLAAIVKS
Ga0210404_1000046721	F014965	N/A	VTLVGVRVQVKPVAGETVAVRLTTPLKPCRPVTVIVDVPEAPARIVTVVGLAAIVKSWTV
Ga0210404_1000046722	F014965	N/A	VTVYAPALPVHESVEVPEPVTLVGVRVQVKPVAGDTVAVRLTTPLKPWSAVTVIVDVPAVPAITVTLVGLAAMVKSCTV
Ga0210404_1000046723	F014965	N/A	VHDRVLVPEPVTLVGARAQVRPVAGETVDDNDTTPAKPWRPVTVIVDVAAVPALTLTAVGLAEIVKSCTA
Ga0210404_1000046724	F004601	GAG	MLLGVRVQVRPATGAIEEVRATVPVKPLSGATVMVEVAAVPALTVRAVGLAATVKSLMVTVTVAE
Ga0210404_1000046728	F014965	GGA	MLAGVSVQVRPVVGDIVDTRLTVPLKPCRAVTVIVDVPAVPATTVTLVGLAAIVKSCTVKVTVAE
Ga0210404_1000046729	F014965	AGCAG	VHDSVLVPDPVTLVGVKVQVMPVAGDEVAVRDTTPANPLTAVTVIVEVPAWFTLTVTLVGLAAIVKF
Ga0210404_1000046737	F014965	N/A	VLVPDPVTLVGVRVQVRPVAGETVAESETTPANPWRPVTVIVEVPEAPARIVTLVGLAAIVKSWTM