Scaffold Ga0210404_10000428

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000428
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22551
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005236	Metagenome / Metatranscriptome	407	Y
F023303	Metagenome	210	N
F030713	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000042811	F023303	N/A	LSFSQKKFPLNSGLLLIIALIGTLAISVTSFLLIVLGRGGPSLAGYGVGSMSLFAFLLTIQVLHGKTESKDDFVKKGAVRTAIATSFTVAYLMLLALGLDAGLGLNLNNGILANFHIVYIFTIGTYFVTASLERIVDLVKGKSSLFG
Ga0210404_100004285	F005236	N/A	MGKILIGLAILILPVAVSLTLIFSEILTTVGVVVSLGGSVFVFFCGIYAGFLGIKYERLQQQFESFVNPLRIRSNAVNLIKAICPIDHDQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEIAQIADSAPN
Ga0210404_100004288	F030713	GAG	MNEKKRLPPWEEAKLVFKMQEETRKRKLLEEDMQRRRGRAKRVGPNTSDELEENRKRLRALQDRIEHDVDR