NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000260

Scaffold Ga0210404_10000260


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000260 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31464
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005777Metagenome / Metatranscriptome390Y
F019975Metagenome / Metatranscriptome226N
F024764Metagenome / Metatranscriptome204Y
F035699Metagenome / Metatranscriptome171N
F084041Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000026020F005777N/AMDDARLQTILEDGDEYVSVGLVTLACQINKTHGDPNPNHSSVTECLKGSTIRIPSTGQPASPRIVGKTISRSQFRNLKGGTASPGPLYEKKTFRLLGFSANTIAFLILGYFLGGIALSPPLGQPICTGVSISPAALVPCEGSIIGLVVSAIGGIGYTYYYFVKRL
Ga0210404_1000026024F084041N/AMQVPKKHFPIVGLLGLVVVAAAGGGVYYYQFVLSHTPITFTPSHRLVFMTAIIQEQGGFHITNTAFLNQTNLPSFDSSKGYNLTGVNYHNYTGESDHKTIDAHVGDTITFYILGVNATSPCNTNPANECWLSTAHGFAISGPGNVNVSNGGVLPGTIPFGKWYTVTVTFNVGGSYSYFCTIACSPQHTAMNGNIAVT
Ga0210404_100002604F024764N/AMNRENIAKFGTKTVRYIIVLAILIGIAGSATYAVMSDTSIHGLTVRFYNNVSRSCGPTTVPVLTFNFSQVVVYSTASLETTLSHVRFTMSADGVLVGTVTAQDSKFGPGQSVPYPLLFSNGTIDPHSQPLKSQIALGITALVSAGLYSSTTTASDLELVTFSGSPC
Ga0210404_100002605F035699GGAGGMLFFSSQTPWGMPKKNGIPKSLLADIKSVKTRLSGLEKPKAILSDIGSLKSRLGNLEKAHASINKELKNISDALKRQESTIAQLGKKPAKKEKRKPSEYNLFLKDKMSAGMSMIDAVKAWKEKEGGSPSSSMKQPGQDWQSPSQQY
Ga0210404_100002607F019975GGALAHPPRVKRATFNGVPHLPFQEFTVSSLEALLNILKKARIKDSEIEVSTSEESQHTTCSKPIIHVLVMTAKGEGAGEHKDLAALYQYCPGCGSTVRVL
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