Scaffold Ga0210404_10000191

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000191
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38346
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (77.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000916	Metagenome / Metatranscriptome	835	Y
F002922	Metagenome / Metatranscriptome	520	Y
F005205	Metagenome / Metatranscriptome	408	N
F008075	Metagenome / Metatranscriptome	339	N
F009595	Metagenome	315	Y
F013400	Metagenome / Metatranscriptome	271	N
F025702	Metagenome / Metatranscriptome	200	N
F027474	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000019113	F025702	N/A	LQTPARLKDLEHSINEDLSKANLPEIKISGFKLPEQALELTFERETVTGVIRDKIWEIINSHYKKLMNELGLLEG
Ga0210404_1000019116	F013400	AGGAG	MADATLLTGMWIVAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSLFGIVLLLINPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFRLAAKKPPGANAST
Ga0210404_1000019119	F008075	GGA	MQTLKTLLSYSLETYADKPSELHRELSRVFGSGATTLERMITKELFQRLSLRYSNELDFETSVNLARRDMILSERGNN
Ga0210404_1000019120	F009595	GAGG	LRSDIIETFQGTLVRCFSETIENLFGRPVKEQLMRILAEHKIPRAEIGARFDDVARVLGEVFGSSSRLLVFKTVVGLYEEYSVRASFGFYDSLKDQILYLREKVLADIIKPRHSPTIDDSIYITGPRPIA
Ga0210404_1000019126	F027474	N/A	MTDQAPNWRIHVKKGSYEVEVEGPNPERVEKMFDELVKKYMKKIASS
Ga0210404_1000019130	F005205	N/A	MSTVNVKTALQAPKHVRAILSGGLGVFSSLLAIGWALWAYNLPSAVNVNSSQSQNLMLAQLVIAFILLLGSGLMLARFTLPGGIINILGALGTFLIGVYFSSGVADAARSKDLTALPLKFSGVYTGTVSLATDRIVSTFLIVPVFPIAALLLISGLGALATYRSGKRATIHL
Ga0210404_1000019137	F000916	GAG	MATQTQQKRTRSLAQRYEMLRKTLAHYLLLQVGTFVTAAGFDAIAPAMNILTDMKANLKVQDIKAKGHQNGVEALSQNLAESMGETFDSDYEVERGDASQTVKLDRCGCIESVVSQAEAYGLTKVQARSIFCGTCMSSYKKAAESLEVGFKGRLRGEYGCSMSFSKK
Ga0210404_100001919	F002922	GAGG	MTTVALQIDEVIGLLGNAGFLWALLLGTWGALSYSFVRHRKHGPKVGPSQAAGAVNFSLTKPRLSEEEIFRILTTTETNIQIVRICESPKTAREISKGLGDVYPGHKEKGFPAEKLGEHLANLERLGAVKFNGEKWAASDVGMKMVRKYFG