NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000164

Scaffold Ga0210404_10000164


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000164 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43578
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008609Metagenome / Metatranscriptome330Y
F010607Metagenome / Metatranscriptome301N
F023559Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000016441F010607GGAMVKVDRYGVVARFARLFPDPAVFEDQDRLVERYLVQSGLPKEKSLYLYQPEGEVDPVDDSGKPAVASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSSEDHSRLWKKQRIGEMSFQLRDFRHETQGLSLTNVSELYEMMKKRSQTTSLSSIELGKMPEDTFQLTVAYLKSQLRKSAEQDGLEVEVYAAKDLSASEKGSLEKRLTREATGSTVYVILSKPSDLMKIETR
Ga0210404_1000016443F023559N/AMSGPAKMASPKKRIPKPDLSKYDQSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVEGDARLYTPLSDEEKGEIERNLRGSHKDALINHL
Ga0210404_1000016444F008609N/AMKRSFLIVGIVLLVLGIAGYYITSQTNLIGGRTHTTYPFGGIALAVLGALITVGGVMMGQGGAKTSNQFKCDKCGATFGSQAALDQHSKDKHKM
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