Scaffold Ga0210404_10000076

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000076
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74311
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (54.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F023557	Metagenome	209	Y
F024510	Metagenome	205	N
F029700	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_1000007615	F029700	AGG	VPALVIPNKSKSLNIPVFQSRIPTSEELVVLDKPLLDATIEVGNLLKDCHAKWALAGDIGEILNGVNVQPDHLTILTSFAGCEEISRKLEEFQVEASRYVETQIKRKAEIESKPMPITIKSYASQFNVNGQTLNVHGDLRIKVGDWDWGDPIDYEPEDVYVVGVKVPVVPLELKIQLYRGLGWYDRVSKIHGAMARRHHKVG
Ga0210404_1000007634	F017116	AGGAG	MAFDIVDIFEIISLVLILVAFAIFARLAIKGKNLGSFRFQLSIFMLIWVLSEIPHIFSTLGLIDTANYSDIGLYLHATSMGVFALFVGWRSIKFLTIHPTPPTGAMSVATKPPEGFKGGM
Ga0210404_1000007635	F011479	GAG	MSKILGADTWKAINFFFDMKTIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGAVQQTSSNFDFRQILRLAKAKFPRQAIPEALGQ
Ga0210404_1000007650	F023557	GGAG	MNSRAVGYELVVFVTQWGLMLLGFGVLTKFVAPLNLLNPSLSLDLYFDAAVKALIALILSVAWLFIWDRQVRLYFHRRAR
Ga0210404_1000007653	F024510	N/A	LRLTIEEYGPWISNELDNQLRSTRTKAAKLVDEAKRAVSEAGSFYEDLGKKGDRDMATKKDAASYRAARLIGHGAHEAAARVKEIVIPNDTSWESLRIVKDSLSVASRSIRDLRDSTARELSGFYILDMRSFGGSLDRIAKSGDRLATFLEGEGAKLQRARTMTGIFESIKTARRELDEKATEMGAVNKELGRLNASESELTSKISQLETDSDLREVLDIEKELRKESRAFRAETLAHLQRPLRRLADLAQRGEYPLGSDEREALSAFVKSPYKSFLSKSTGEYLARILESMKKAIDSGKMGFKPKKTGRVSVQLNQLIGTPHLVEKQEKGRRLLARRRELLRRADCKDIYERRKALLSRIEETRLEELTVQEKMRSASSMTEAVNKRMIELLKQAEMKTREYVGKDVELEGASL