Scaffold Ga0210404_10000041

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000041
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118357
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (72.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003398	Metagenome / Metatranscriptome	489	Y
F004328	Metagenome / Metatranscriptome	443	Y
F005421	Metagenome / Metatranscriptome	401	Y
F005712	Metagenome / Metatranscriptome	392	Y
F023651	Metagenome / Metatranscriptome	209	Y
F038764	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_10000041103	F038764	GGAGG	MFTIRPRGRNSRALWFALPMLAVSAFATEPRPADKETAVSRDSVIRIVQQIQTADYEGDRATLNRLYEQLVPFVDEPEIASRVRYWRGFAKWRRGVNGFNETPTPTDLAEDLAQAESEFDAALQRDPGFVDAKVGAASCVGTRLFLERVFSKEKDPERLKQILAPVSQLLNEAKAAAPENPRLLWVVGPNEWNRPPERGGGQDKAIATYQKGLDTIRKHTENSSDPLEPTWGEPELLMSLAWSNLNRTTPDLSAAEQYAQAALKLVPYWHYVRDILVPQIHAAQAKAH
Ga0210404_10000041108	F005712	AGGAG	MKSIRRFAYAAVLLLSALTFAPSLASAQEAAGTFTLTHEVRWQNAIVPAGKYRFTMGANGPSELLTLSKISGSGAGFMLLVTDTEASKPSDLSRLVVVSRPGGSFVSTMQLPEFGVTLHFAVPSETREVAQSAATSTASAAR
Ga0210404_1000004113	F004328	AGGA	MPDQTINPAPVPPATPSTAANTAPQTAQRGPTINIADEFGTAKRNLPPVKVLLLATAGVLIIAGIAAFLQRAKPQAAGSLDSVVAVEIPGQSAVLVALTFTLHNSREKSLWVHGVQAKLATSSGELSSDAVSAVDFDRYYQAFPALKANAQSALAPEDKLQPGQEVKRTVIVSFPVTMEGFNQRRSVSVVIQPYDQPVPVVLTK
Ga0210404_1000004141	F005421	AGG	MRFSSRWLTWLCLSLMLWTAVAESTHNHPNKTESASCSICVVAHSTTPTASSNHARPVFAAVGQLQEEEVIAKARLNVFDLGIRGPPTV
Ga0210404_1000004165	F003398	GGA	LQPHVPTREGYNPLIMAIRNIESPPVSEVCARVKHLGYAASGRVRLYGEEFEVVSDPFPEADGIAVHVTTKKDSRVRVLQLPATVLQSVRGRGKSAA
Ga0210404_1000004178	F023651	GAGG	MSRKDVLVLASRTLALLLVVWALAEASYLPESLHSFLRYINREPGSSTAIQYWRHYYLIRLSFGLTRMLGFSLLARWLFRGGPEVEELLSPSTPHEQNAGQN