Scaffold Ga0210404_10000016

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000016
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 341892
• Total Scaffold Genes: 267
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 214 (80.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009834	Metagenome / Metatranscriptome	312	Y
F011163	Metagenome / Metatranscriptome	294	Y
F039510	Metagenome / Metatranscriptome	163	Y
F084499	Metagenome	112	Y
F095374	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_10000016114	F039510	N/A	MNGPSVDKLRDELERLMKEHIEATERRTFLGITPEEVLQEKERLERIREVSAEFLHALKKLQT
Ga0210404_10000016176	F084499	AGGAGG	MLEIVWRNPQPPAKRMLRIEEVWADESAVAPMWVVFYHTLLDSGWAENEFRLLVNRNVQGSIAV
Ga0210404_10000016184	F095374	GGAG	MSTRPSFAVLFALLLSCAALSQDQIKDQLKIAPLPYDPFELATGPTVVPDTPQKRELMLALLERARQNHGMHAPGSPAFAMKVSFNSTGTSRYTGFGEMEETWMSPSTFRWSARLGDYSQLRIYSDGAAYDDKPRGPIPLRIQMVRQSVFWPVTGRFAPALIRMATAKWQGSEVACMLISGAANDASATPGRRWEETEYCIDPQTGLLRTYSEAPGIYNVYDYSEKFEFHGHTLARQISIVEDGVIVLQIHLDSLADAANADPDQFVPTKKMISHGPGDILVGPFRFPQSVATPAGRSGVIQPVIVHAVLDKKGHVVEAEALQHSDTLLADAALAIVQRSNYAKRDQGRPVQREAFINVQFIPQ
Ga0210404_10000016247	F011163	AGGAG	VGFGMEMLFVLMLGLLILGPKRLHTILVHVSQAKAELQNATRGLRSQLAAELDAAPEPRRTECAHVLVGDCEFCATFKSEAEFSEPAEDALIGS
Ga0210404_10000016260	F009834	AGGAGG	VIKISKSRFVNLSSMALALLTTVLLVTSGASAKERKAKASDNQAHVVAHIPFEGLSDVDMAIQKKVNDKYYLYVQHSKEQGISIVDISKPDHPKSVGMVPWPEPTASSRMTVTGDLAIISETDVARRSSSDEELVLWDLSDPAAPRVVQKFEGVVKWLQDQRDFIYVLNAEGLWIVSKPMDTRPNQTDSSESYGG