NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000006

Scaffold Ga0210404_10000006


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)729906
Total Scaffold Genes655 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)499 (76.18%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000378Metagenome / Metatranscriptome1211Y
F000655Metagenome / Metatranscriptome958Y
F000822Metagenome / Metatranscriptome876Y
F001511Metagenome / Metatranscriptome680Y
F001701Metagenome / Metatranscriptome649Y
F001748Metagenome / Metatranscriptome642Y
F005421Metagenome / Metatranscriptome401Y
F011500Metagenome / Metatranscriptome290Y
F012599Metagenome / Metatranscriptome279Y
F013787Metagenome / Metatranscriptome268Y
F014166Metagenome / Metatranscriptome265Y
F015759Metagenome / Metatranscriptome252Y
F017174Metagenome / Metatranscriptome242Y
F017614Metagenome / Metatranscriptome239Y
F035862Metagenome / Metatranscriptome171Y
F038174Metagenome / Metatranscriptome166Y
F080971Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000006170F000378GGAGGMEDRAPDVSSATQSSLTQSSATRHLAGRGAWVLTAYGISGLALFGLLAYFFSDFIAH
Ga0210404_10000006190F080971GGAMRLPNRRELRGKLHQLSVTGGLMHVEKPLDEKLKIELIFHIGETTVREKAEMMFPMWATQGWLQPFRFVELAESSKNGLEKSLLQFVQSLQKPA
Ga0210404_10000006191F011500GGAGVTVTSMDRRHPFSASCVALVVSPQGCGFRTTHPLPIETPVLLSDLPGGKSASGRVANCLPLGKDGNFLIGVSLYNPGNVWGIIDPPADWNCEGSASSAAVAGEAPAKNKNAWPYNLFSGQGEAHPGRK
Ga0210404_10000006246F017174AGGAGMYSWEDPGDRVSIAQMNSELQHAQLELLSAHCAVHQLRLRFSADDLARFGQRDILRKSVQAASALNEYYTSIEKRIPPAEASSEPVRVSETLILQAIDRLAAYLREQRERYFQSAVSLSKHQQALMWPYFSAALLDRVRIFNLEGKRIPNPPFYDEYRALGFVNLPEVAHMHSLTFLDLVIFHETISERFLFHGLVHAVQFEVLGLDRYCDLFVRSFVNTKLHFSVPLESHAFSLESKFAGNPSRRFSVEDQVRLWAKQARY
Ga0210404_10000006292F035862GGAGMASQSKNAGLGVALGAALGAVAGVLAGHIAIWLGIGIVIGMALGATFRRAEERCPECAVIHQKHEARSGQVQSSLGSGR
Ga0210404_10000006296F017614GGAGMYLQPVVRCKNPDCPTPSAARIRLPYPNPPKTGATPPEWPKEGWKLHLICRECDHWYVYEKEDVMWASYSSPLSEHSGLDFQCVEMECAEPGCGSRTRWHVLDNSQLSETELLEFVLRADPVAVCENGHSLSLSGVASSSVQKAESV
Ga0210404_10000006349F014166GAGMNHDSFSISKTIFESAATLVIFGLLLGATSAQTNKKSTPSVGGVPQAHAQQGNVEQELVRIETGFFEAWKTKDPAYFREHIPENGIFWGEYGIASRDQQLAAQEGSAKVCTVEGYGLSDFGALPLAAGVYLLTYKAEQYATCNGEKVPVHMNGSSVYILKSGRWQAIYRADVPAKN
Ga0210404_10000006386F001511AGGAGGVEYVMFEDVDGMEVFVNPEHVVWVREYPGEITVISCGHEDRFKVRLSPAQAVAALGKAVR
Ga0210404_10000006392F001701GGCGGMNSAGSIKFLYAAYTATWVIHVVYIGSLVRRYSKLRQQRKELGKGSGG
Ga0210404_10000006413F000822AGGAGMNRAAIFCAAGILALAGATYSQSPRVFRGEISDSQCALNVHSLTRSHQEMLKSKSMGGTANTCSVYCIEHMGGYLVLSSGNDVFRLDRSDLVHGFEGQRVKVSGVFDPKLKQIHVLKIELENPKN
Ga0210404_10000006429F000655N/AMIWWFLILGCSTLVVVCVAIALYMRLRRHLQAAHAAREGSSSEVEHERKSGDIEH
Ga0210404_10000006446F013787GGAGGMSSVGDGEFLRLLKKDIEYFERAVERFEDLIPRVCAPVQDQWRLQAQVRKDFAFELEILLDKAEHCVNDTVGVKNETHPNSASC
Ga0210404_10000006531F015759GGAGMALHASIGLSGQDRQKCSFTMPAKATKLNKHGAAVRLSRELLVGSVVSVNNRHGIELSARVVARLAALEGVSTYAIEFVEQDERAETFWGIIFPPNTSNA
Ga0210404_10000006547F012599AGGAGMKKVLVCLLALTFTMSLTAFAQYSSTSQDNDMAKTQTDAKAPLMTLKGKVKIDGDKVMFVNDKDGKSWDVMNPEELKAHDGHHVQLSAHVYADKSSIHVMSVKMLKGDSMKNDSMSK
Ga0210404_10000006557F001748AGGGGGVKFKVYFSAGFALLLLATTLAVAAPKPSKSVPAFPGTLVNARYVYVTSYDGDQFNPDLLPEDRRAIGTVQDAMQKWGKFVVVYEPRQADIILMVTSRPTEDILAVYDAHGWPDNQYLWRMMGRSGLQPNESPLVTNLEKAFERATAK
Ga0210404_10000006582F038174AGGAGGMDGTRHLSSLLIFVLALAPNALSQDIPSHPKPGAAVCVATVTNMGARAALVDRMTERLTKDLKEEKIRALAMDSRTTMDAKLHPTQENGEEAKSRECDYMLLTQIVDPKTHPFDPQSPQISIGRRVPSTDASDPLGGSSGPVYRDNVQISFALFPMDRLKPILDTVILAQPSGHASDNLMSAMDNESNRVTHELKKK
Ga0210404_10000006629F005421GAGMRERMRLTSRWLTWLCLSLMLWTAVAESTHNHPNKTESASCSICVVAHSTTPTASANQARPVFAAIGLLQEEEVIAKARLSVIDLGIRGPPAV
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