NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000005

Scaffold Ga0210404_10000005


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747290
Total Scaffold Genes691 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)481 (69.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000928Metagenome / Metatranscriptome831Y
F004592Metagenome / Metatranscriptome432Y
F005077Metagenome / Metatranscriptome413Y
F022707Metagenome213Y
F045975Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000005330F005077AGGMDQLRRDRATAQVLRTAFPAVQHLRIELSFQGPTAGVPTPQAHLLYPPARAFFEYRCPYSDCDGQFDLGDAVKAALADTAHSAHGVLKCRGSRGRDPVSRRPCLLEVSYEVTATYLQQS
Ga0210404_10000005393F000928GGAMQASFLTVIKLRREIAARYARVHRLWVTASNAYRRLHAAPIQDLSALRDAGQRLAELDRGRTALLSDLKALAD
Ga0210404_1000000543F045975GGAVPLDAAVAVGFLTLVQVRARDPLEAEIRAVERVAADWSQSAWAPGNLGNSPYLTITRVGLLSWWHRLLGAPKGYIFFAEDGMQLKPVDRPRRRH
Ga0210404_1000000594F004592GAGMSASELQRAEWLNPRFWDRLDRLESRHRRLQNEYNEARRDLDQLSPTESKELQRAWRHYCEVIAELERVAGEFQDLTRGAG
Ga0210404_1000000595F022707AGGLTPPRPPQPKLSRRGSAGLGALEASVQKLGMHRRAALRLLLTSRNATTTPAQREFWLEFSWIDEEYRAAVRRLAAFCAARRDGSGAREACRELAGQGS
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