Scaffold Ga0210404_10000003

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 797820
• Total Scaffold Genes: 704
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 546 (77.56%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F000687	Metagenome / Metatranscriptome	937	Y
F000949	Metagenome / Metatranscriptome	823	Y
F001759	Metagenome / Metatranscriptome	640	Y
F001829	Metagenome / Metatranscriptome	629	Y
F002337	Metagenome / Metatranscriptome	569	Y
F003215	Metagenome / Metatranscriptome	500	Y
F007635	Metagenome / Metatranscriptome	347	Y
F008829	Metagenome / Metatranscriptome	327	Y
F028256	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_10000003187	F000687	GGAGG	MQIQESTSAARTIVNPGNGHVEEVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDAVLSDELLELVDRKSSGRQPGFTKACRMVLMDANRALSARDVCDRIQEKSPPLLARHKDPMASVTTVLNRLVAYGEARAVSLDSGRRAWQWVADSDAPTGLPISA
Ga0210404_10000003195	F007635	GGAG	MEFNPNKESRDVQKKVEFDAHKVVKKETEVEFTKRDGTPVDFMAKKPVKVPVHVKFRAEDKE
Ga0210404_10000003249	F001759	N/A	MTLKSAVQDVRETTLAAVSGLLAKLTYLGSLRRREGGYLHWGMSLVHGEEASERALKAAHAEVLSTVLRTPITDLVEDLHQSSSQGEETAGAYIEGMREQLGELLPSPQDAASARHLSSVLVALSSLEKTQTRATPSTSSQPLPPGR
Ga0210404_10000003251	F002337	GGAG	MNLAIVLVIVAVFSLAVILSVAVSRSLQSRNRAVLSGTIRPIDVEAFRNLINPAEDDYLRRRLPPGQFRRVRRERLLAMAAYVGVAANNATVLVRVGQTALAGGDPRVAEAAHKLVNDALLLRRNATVALARIYLALAWPNSGLAAVRVADRYEQLSGAAMLLGRLQNPAVPVRLFAQI
Ga0210404_10000003328	F001829	GAGG	MKKQYLHLSAYACDQCSGPVISGAVAVRENEISKETDIRQVGAICLTCGKRQSPSTDPGRVRHLLPIEWNPETGAEPLTVAYMEGLNRVELH
Ga0210404_10000003396	F028256	GAGG	MERPFSHLLGTTGLVLTMLLWLSLLNPPRADHLVDSLAGPQHEYKIVLGAALLAVVLAFVAAIRGSKWWYIGVVLSSGTLAFFTYTLSGAAR
Ga0210404_10000003425	F000949	GGA	MPFYALAALAGAGIGWADVAINDLLFTALLVLMACMLLGLLRPRWSWRWVVVVGSFIPLAEFAAYLFFSVKPTRGQMYGSVLASLPGVAGAYGGAVMRGVVDHLRQGR
Ga0210404_10000003430	F003215	GGAG	MKGIVRMLRIVRWTMLGSILLYAVIGEVIGTGARAVDPSLSYGFSTASVAIVGLIFVLRRTLVLRSAESLASHPDDALTLRHWKSGYIATYALCEALALFGLIQRLMGFNLQQSLLYYLGGFVLLFFFGAREPVSS
Ga0210404_10000003641	F008829	GGAG	MKRPSLLSILLLLAAPSVFAQARQIRHERRPAAPTTVAAPGPQAQPTYQYFTILDGTPKGLWLRHDTEVGTGKPIDVYQFAIELQVPNSDGNLEPEGLIIDNFYTAKAVEPTRALNPHNARDCKIWNEYVLNEISTRNPLDPTWPYVEFATALGARTVQTNEDGYVWWSDDIECWGSQDRFPPF
Ga0210404_1000000384	F000078	AGGAG	LENMHCLRCNRELGPGQKSVALYMFAQTVGIRPRQKSTAHRISFCPQCAVSLAMGPPPEGALNIAAWDMIRDLVGSDPALNEAAWESLSGVLGLLPATGTDGASRSAQAAGYFEF