Scaffold Ga0206683_10186987

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10186987
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F070548	Metagenome	123	Y
F098058	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_101869871	F070548	GAGG	MANWDNRTLQTPEPIKKIGQNAQNVINNLDTLLKIVKSGAEVAKMFLLLSNPAGAIIKLAADEIIKAANDFKEIGMFYLFINPNDDGYGNQTTRELGLAIKRDGLTG
Ga0206683_101869872	F005832	N/A	VPQQLWWGDNMSKEGLWQDSKGMKDSEMVEKWTNVLHTVEYSIEQLKHQKTALMKKREDIVKSEENKNG
Ga0206683_101869874	F098058	N/A	VLNTIDGWGDGLETGTGNYYDGYFYVTIYNSTDSDRDDQVVIWSDQNNASTSTLDFNGNAFKHRDDPDDPDTEISILNEEALANSYSNGDFTLLTSV